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ForewordsThe Linux operating system is a great platform for computing. However, it takes some efforts for users who migrate from other operating systems (e.g., Windows) to get started. For example, when I migrated to Linux, I spent quite some time trying to understand how to install the latest version of R on the system. For those of you who are in the same situation like I was, I am writing this tutorial to help. In this tutorial, I will not only show you how it’s done, but will also inform you why each step is necessary, so that you can get a better understanding.This tutorial is based on Ubuntu, which is perhaps the most popular Linux distribution.
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Before diving in, here’s something you need to know: (1) most Linux distributions including Ubuntu include a program called bash that runs various kinds of commands such as those for software/package management, e.g., apt; (2) you should not confuse package installation using the apt install command in a bash session (which can be invoked by pressing CTRL+ALT+T) and that using the install.packages function in an R session (which can be invoked by entering R in a bash session). Installing r-baseYou can install the r-base package, which includes the essential components of R, using the apt install command. By default, the command will search and install the components from a repository called Universe. However, the version of R included in this repository is typically not up-to-date. Alternatively, you can tell apt install to obtain the latest version from a CRAN repository.
This can be achieved by first adding the following entry in your /etc/apt/sources.list file in a new line (you can run a text editor as root, e.g., sudo nano /etc/apt/sources.list, to add the entry): deb /Note that you should replace with one of the urls provided by this; replace with your Ubuntu release code name adjective, see for a full list. For example, Ubuntu 16.04 (whose code name adjective is xenial) users can add the following entry: deb xenial/Update: for Ubuntu 18.04 users, the entry should be (note that currently there’s a suffix -cran35 to the adjective bionic): deb bionic-cran35/After adding the entry, you will also need to add a key to your system so that apt can perform signature checking of the Release File for the added repository to verify its authenticity.
The CRAN repository for Ubuntu is signed with the key of “Michael Rutter ” with key ID E084DAB9. To add the key, enter the following command in bash: sudo apt-key adv -keyserver keyserver.ubuntu.com -recv-keys E084DAB9Now that the setup is done, you can install the latest version of R (remember to first update package index files from the repository): sudo apt updatesudo apt install r-baseNow, you should be able to open R by entering R in bash. Installing r-base-devAfter the installation of the core packages, you would typically want to install additional R packages using the install.packages function in R. However, the function depends on the r-base-dev package to compile source code for some R packages. Therefore, prior to using the install.packages function, you should first install the r-base-dev package.
Like r-base, the r-base-dev package can be installed in a bash session: sudo apt install r-base-devNow, you should be able to install most R packages using the install.packages function in R. Installing tidyverse (or other R packages with system dependencies)You are perhaps aware that, when you install an R package that depends on other uninstalled R package(s), the install.packges function will automatically install all the required packages at once, even if you don’t explicitly tell it to.However, things are different when you install an R package that depends on other uninstalled non-R package(s). Under this circumstance, you will always need to manually install the required package(s) before you use the install.packages function.A good example would be an R package called tidyverse. In case you don’t know, the tidyverse is a set of R packages (e.g., ggplot2, dplyr, ) developed for data science (e.g., data visualization, data manipulation, ) under a tidy and elegant design philosophy. You can visit the for more information.In short, the tidyverse package requires the following non-R packages: libcurl4-openssl-dev, libssl-dev, libxml2-dev. Like r-base and r-base-dev, you can install them in bash: sudo apt install libcurl4-openssl-dev libssl-dev libxml2-devNow, you should be able to install tidyverse in R using the install.packages function: install.packages('tidyverse').
Installing RStudio and RStudio ServerIf you are looking for an integrated development environment (IDE) for R, I recommend. The installation of Rstudio is simple and straightforward.
First, download an installer for your system from. Second, double-click the installer (the installer for Ubuntu should have a file extension “.deb”) and follow the instructions. The whole process is very straightforward so I am not going into the details here.If you need to use R on a remote Linux server, you’ll probably need RStudio Server as well. Briefly speaking, RStudio Server provides a browser based interface to R running on a remote Linux server. To use RStudio Server, you’ll need to following steps on the remote server.First of all, since RStudio Server by default does not allows system users (such as root) to authenticate, you need a normal user account with sudo privilege on the server. The following code shows how to create one: useradd -m # create a user with a home directorypasswd # set passwordusermod -G sudo # add the user to the sudo groupSecond, install gdebi and RStudio Server (you can find from ): sudo apt install gdebi-corewget sudo gdebi If you installed RStudio using a package manager binary (e.g. a Debian package or RPM) then RStudio is automatically registred as a deamon which starts along with the rest of the system.
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Linode's Dedicated CPU instances are ideal for CPU-intensive workloads like those discussed in this guide. To learn more about Dedicated CPU, read our. To upgrade an existing Linode to a Dedicated CPU instance, review the guide.Minecraft is one of the most popular games in the world. In Minecraft you and other players are free to build and explore anything you want in a 3D generated world. If you host your own Minecraft server, you decide the rules, and you and your friends can play together in this interactive adventure game.This guide shows you how to set up a personal server on a Linode running Debian 9 or Ubuntu 18.04 LTS.
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We have updated this guide to be compatible with the major release of 1.13: Update Aquatic. Prerequisites.To use a Minecraft server you must also have a version of the game client from.Complete our and guides.Update your Linode’s software: sudo apt update && sudo apt upgrade.Install OpenJDK, an open-source implementation of Java, and the GNU Screen package. If you have a firewall configured according to our guide, add the following line to your iptables.firewall.rules file to add an exception for port 25565:-A INPUT -p tcp –dport 25565 -j ACCEPT Install Minecraft.Exit your current SSH session and log back in to your Linode as the minecraft user.Download the latest version of the Minecraft Multiplayer Server from. Replace the URL in this example to match the current version: wget -O minecraftserver.1.13.jarRefer to the to check for the latest release.Create a script to run the Minecraft server: /home/minecraft/run.sh. The Xms and Xmx flags define the minimum and maximum amount of RAM the Minecraft server will use. The settings above are recommended for a Linode 2GB used solely for this purpose. Adjust these values to fit your needs.Make run.sh executable: chmod +x /home/minecraft/run.shRun Minecraft.The first time you run the Minecraft server it will create an EULA file and then exit: $./run.sh21:39:43 Server thread/INFO: Starting minecraft server version 1.1321:39:43 Server thread/INFO: Loading properties21:39:43 Server thread/WARN: server.properties does not exist21:39:43 Server thread/INFO: Generating new properties file21:39:43 Server thread/WARN: Failed to load eula.txt21:39:43 Server thread/INFO: You need to agree to the EULA in order to run the server.
Go to eula.txt for more info.21:39:43 Server thread/INFO: Stopping server.Open the eula.txt file and change the value of eula to true: /home/minecraft/eula.txt. To disconnect from the screen session without stopping the game server, press CTRL+a and then d. To resume the running screen session, use the command screen -r.Optionally, you can take this opportunity to disconnect from the screen session and customize your game settings.
When the run.sh script is executed, a world is created with the default variables. If you would like to create a new world with updated variables (like ), change the level-name directive in the server.properties file and modify other settings accordingly.After stopping and restarting the server script with the level-name changed, a new directory is created that contains your game data for that world. For more information on available settings and how to modify them, refer to the.Connect to your Minecraft Server.Open your local Minecraft client. After logging in, click on the Multiplayer option:.Click on Add server and enter your Linode’s IP address or domain name.
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When you’re finished click Done:.Your server is now available to incoming connections. Click Join Server to connect:Congratulations!
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You can now play Minecraft in a persistent world with your friends. For more information on working with screen, check out our guide on. More InformationYou may wish to consult the following resources for additional information on this topic. While these are provided in the hope that they will be useful, please note that we cannot vouch for the accuracy or timeliness of externally hosted materials.Join our Community.